PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5AL_69C653611.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 67aa    MW: 7983.9 Da    PI: 5.0974
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5AL_69C653611.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.91.2e-112566142
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                           +fYn+YA+e GFsvrks+ +    n+ i+ r+ vCs++g+re
  Traes_5AL_69C653611.1 25 EFYNKYAREKGFSVRKSYVEWDGSNKYIIIRKIVCSRQGFRE 66
                           6***************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-92566IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
ASDESMFEYV NVVSKMFDSE AEGYEFYNKY AREKGFSVRK SYVEWDGSNK YIIIRKIVCS  60
RQGFRED
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703067e-99HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456168.15e-22hypothetical protein SORBIDRAFT_03g031563, partial
RefseqXP_002466791.12e-21hypothetical protein SORBIDRAFT_01g014270
TrEMBLW5EXY36e-42W5EXY3_WHEAT; Uncharacterized protein
STRINGSb01g014270.15e-21(Sorghum bicolor)
STRINGSb03g031563.11e-21(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-07FAR1-related sequence 10
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]